Serialized Form


Package databionics.esom.gui

Class databionics.esom.gui.AboutDialog extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

img

java.awt.Image img
background image

Class databionics.esom.gui.BottomBar extends javax.swing.JTabbedPane implements Serializable

serialVersionUID: 1L

Serialized Fields

application

Application application

Class databionics.esom.gui.MainFrame extends BaseMainFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

application

Application application

renderer

Renderer renderer

mainMenu

MainMenu mainMenu
the main menu


renderPanel

RenderPanel renderPanel
the render Panel, holding the ImagePanel


bottomBar

BottomBar bottomBar
the bottom bar holding the informational tabs


scrollPane

javax.swing.JScrollPane scrollPane
the Java Swing ScrollPane


loader

ToolLoader loader

Class databionics.esom.gui.MainMenu extends javax.swing.JMenuBar implements Serializable

serialVersionUID: 1L

Serialized Fields

loader

ToolLoader loader

chkCascade

javax.swing.JCheckBox chkCascade

loadWTSAction

LoadWtsFileAction loadWTSAction

loadUMXAction

LoadUmxFileAction loadUMXAction

openUMXItem

javax.swing.JMenuItem openUMXItem

openWTSItem

javax.swing.JMenuItem openWTSItem

Class databionics.esom.gui.PicPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

image

java.awt.image.BufferedImage image

image2

java.awt.Image image2

Class databionics.esom.gui.RenderPanel extends javax.swing.JComponent implements Serializable

serialVersionUID: 1L

Serialized Fields

application

Application application

renderer

Renderer renderer
the main renderer


picPanel

PicPanel picPanel
the picture panel holding the renderers image


ccPanel

ProtoPanel ccPanel
panel for classifying points


clareasPanel

ProtoPanel clareasPanel
panel for classifying areas


islandPanel

ProtoPanel islandPanel

selectionPanel

ProtoPanel selectionPanel
panel for selecting points


actPanel

ProtoPanel actPanel
pointer on actually used Panel


bmInfoPanel

ProtoPanel bmInfoPanel
panel showing info


dim

java.awt.Dimension dim
java dimension


compos

boolean compos
are Components shown rather than a single map?


savedTool

AbstractTool savedTool
If components are shown, the currently active tool has to be deactivated. It's stored here to be put back in place afterwards.


selectedTool

AbstractTool selectedTool

normCursor

java.awt.Cursor normCursor

addCursor

java.awt.Cursor addCursor

subCursor

java.awt.Cursor subCursor

loader

ToolLoader loader

Package databionics.esom.gui.util

Class databionics.esom.gui.util.ClassComboBox extends javax.swing.JComboBox implements Serializable

serialVersionUID: 1L

Class databionics.esom.gui.util.ClassNameDialog extends javax.swing.JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

lblName

javax.swing.JLabel lblName

txtName

javax.swing.JTextField txtName

btnOK

javax.swing.JButton btnOK

cci

DataClass cci

Class databionics.esom.gui.util.ColorEditor extends javax.swing.AbstractCellEditor implements Serializable

serialVersionUID: 1L

Serialized Fields

currentColor

java.awt.Color currentColor

button

javax.swing.JButton button

colorChooser

javax.swing.JColorChooser colorChooser

dialog

javax.swing.JDialog dialog

Class databionics.esom.gui.util.ColorRenderer extends javax.swing.JLabel implements Serializable

serialVersionUID: 1L

Serialized Fields

unselectedBorder

javax.swing.border.Border unselectedBorder

selectedBorder

javax.swing.border.Border selectedBorder

isBordered

boolean isBordered

Class databionics.esom.gui.util.GradientComboBox extends javax.swing.JComboBox implements Serializable

serialVersionUID: 1L

Serialized Fields

colorTables

java.util.List<E> colorTables
list with all color tables


names

java.util.List<E> names
list with all color table names

Class databionics.esom.gui.util.MessagePanel extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

message

java.lang.String message
error message


type

java.lang.String type
kind of error


x

int x

y

int y

text

javax.swing.JTextField text

ok

javax.swing.JButton ok

buttons

javax.swing.JPanel buttons

imageLabel

javax.swing.JLabel imageLabel

Class databionics.esom.gui.util.RunDialog extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

tool

Tool tool
Tool to run with this dialog


job

Job job
Job created to run the tool


project

Project project
Project to update after job is done (optional)


logPanel

LogPanel logPanel
Panel to display messages in


components

java.util.Map<K,V> components
Job created to run the tool


startButton

javax.swing.JButton startButton
Buttons. Needed globally to enable/disable and for event handling


stopButton

javax.swing.JButton stopButton

resetButton

javax.swing.JButton resetButton

closeButton

javax.swing.JButton closeButton

callback

CallBack callback

loader

ToolLoader loader

Package databionics.esom.renderer.foreground

Class databionics.esom.renderer.foreground.ForegroundList extends java.util.ArrayList implements Serializable

Serialized Fields

renderPosition

int renderPosition
One of the constants RENDER_POSTTILE,RENDER_MASK or RENDER_PRETILE from ForegroundRenderer.java.


bmSize

int bmSize
Size in grid-neurons for the smallest bm.


Package databionics.esom.tool

Class databionics.esom.tool.AbstractToolTable extends javax.swing.JTable implements Serializable

Serialized Fields

tool

AbstractTool tool

p

java.awt.Point p

row

int row

Class databionics.esom.tool.BottomTab extends javax.swing.JComponent implements Serializable

serialVersionUID: 1L

Serialized Fields

log

org.apache.log4j.Logger log

dataTable

javax.swing.JTable dataTable

scrollPane

javax.swing.JScrollPane scrollPane

scrollPane2

javax.swing.JScrollPane scrollPane2

toolBar

javax.swing.JToolBar toolBar

tool

AbstractTool tool

metaPanel

javax.swing.JPanel metaPanel

Class databionics.esom.tool.ProtoPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

isCreating

boolean isCreating

doubleActPoly

DoublePolygon doubleActPoly

actPoly

java.awt.Polygon actPoly

x

int x

y

int y

w

int w

h

int h

renderer

Renderer renderer

renderPanel

RenderPanel renderPanel

add

boolean add

substract

boolean substract

tool

AbstractTool tool

matrix

cern.colt.matrix.DoubleMatrix2D matrix

Package databionics.esom.tool.bminfo

Class databionics.esom.tool.bminfo.BMInfoPanel extends ProtoPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

xscaledbms

cern.colt.list.IntArrayList xscaledbms

yscaledbms

cern.colt.list.IntArrayList yscaledbms

tool

BMInfoTool tool

text

java.lang.String text

index

int index

count

int count

xCoor

int xCoor

yCoor

int yCoor

g

java.awt.Graphics g

draw

boolean draw

oldtext

java.lang.String oldtext

Package databionics.esom.tool.classmask

Class databionics.esom.tool.classmask.ClassmaskCreatorPanel extends ProtoPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

selection

boolean[][] selection

Class databionics.esom.tool.classmask.ClassmaskTable extends AbstractToolTable implements Serializable

serialVersionUID: 1L

Serialized Fields

currentClass

DataClass currentClass

Class databionics.esom.tool.classmask.ClassmaskTableModel extends javax.swing.table.AbstractTableModel implements Serializable

serialVersionUID: 1L

Serialized Fields

tool

AbstractTool tool

Package databionics.esom.tool.component

Class databionics.esom.tool.component.ComponentTable extends AbstractToolTable implements Serializable

serialVersionUID: 1L

Serialized Fields

renderer

Renderer renderer
the main Renderer

Class databionics.esom.tool.component.ComponentTableModel extends javax.swing.table.AbstractTableModel implements Serializable

serialVersionUID: 1L

Serialized Fields

tool

AbstractTool tool
this tool


Package databionics.esom.tool.data

Class databionics.esom.tool.data.DataTable extends AbstractToolTable implements Serializable

serialVersionUID: 1L

Class databionics.esom.tool.data.DataTableModel extends javax.swing.table.AbstractTableModel implements Serializable

serialVersionUID: 1L

Serialized Fields

lrn

LrnFile lrn

renderer

Renderer renderer

dataclassTool

DataclassTool dataclassTool

tool

AbstractTool tool

Class databionics.esom.tool.data.SelectedDataTableModel extends javax.swing.table.AbstractTableModel implements Serializable

serialVersionUID: 1L

Serialized Fields

lrn

LrnFile lrn
the underlying data


selectedLrn

LrnFile selectedLrn
the underlying data


idxs

cern.colt.list.IntArrayList idxs
the selected Indexes


data

cern.colt.matrix.DoubleMatrix2D data
DoubleMatrix2D with selected rows of lrnFile


selectedClasses

cern.colt.list.IntArrayList selectedClasses
IntArrayList with selected classes


selectedKeys

cern.colt.list.IntArrayList selectedKeys
IntArray with selected keys


dataclassTool

DataclassTool dataclassTool
the renderer


tool

AbstractTool tool

Class databionics.esom.tool.data.SelectionPanel extends ProtoPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

xc

int[] xc

yc

int[] yc

idxs

cern.colt.list.IntArrayList idxs

Package databionics.esom.tool.dataclass

Class databionics.esom.tool.dataclass.DataclassCreatorPanel extends ProtoPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

bestMatches

BMFile bestMatches

idxs

cern.colt.list.IntArrayList idxs

currentClass

int currentClass

Class databionics.esom.tool.dataclass.DataclassTable extends AbstractToolTable implements Serializable

serialVersionUID: 1L

Class databionics.esom.tool.dataclass.DataclassTableModel extends javax.swing.table.AbstractTableModel implements Serializable

serialVersionUID: 1L

Serialized Fields

tool

AbstractTool tool

Package databionics.esom.tool.info

Class databionics.esom.tool.info.InfoToolTable extends AbstractToolTable implements Serializable

serialVersionUID: 1L

Class databionics.esom.tool.info.InfoToolTableModel extends javax.swing.table.AbstractTableModel implements Serializable

serialVersionUID: 1L

Serialized Fields

tool

AbstractTool tool

renderer

Renderer renderer

Package databionics.esom.tool.island

Class databionics.esom.tool.island.IslandCreatorPanel extends ProtoPanel implements Serializable

serialVersionUID: 1L

Class databionics.esom.tool.island.IslandTable extends AbstractToolTable implements Serializable

serialVersionUID: 1L

Class databionics.esom.tool.island.IslandTableModel extends javax.swing.table.AbstractTableModel implements Serializable

serialVersionUID: 1L

Serialized Fields

tool

AbstractTool tool

Package databionics.esom.tool.legend

Class databionics.esom.tool.legend.ColorLegend extends LegendRenderer implements Serializable

serialVersionUID: 1L

Serialized Fields

map

ColorMapping map
The Color Mapping


legend

Legend legend
Panel where the image is shown

Class databionics.esom.tool.legend.HeightsLegend extends LegendRenderer implements Serializable

serialVersionUID: 1L

Serialized Fields

map

ColorMapping map

binSize

int binSize

out

boolean out

statistic

cern.colt.matrix.DoubleMatrix1D statistic

legend

Legend legend

Class databionics.esom.tool.legend.Legend extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

steps

int steps

renderer

Renderer renderer

rendererList

java.util.Vector<E> rendererList

lRenderer

LegendRenderer lRenderer

cRenderer

LegendRenderer cRenderer

pRenderer

LegendRenderer pRenderer

image

java.awt.image.BufferedImage image

actView

int actView

popMenu

javax.swing.JPopupMenu popMenu
popup menu


itmSaveLegend

javax.swing.JMenuItem itmSaveLegend

Class databionics.esom.tool.legend.LegendRenderer extends javax.swing.JPanel implements Serializable

Serialized Fields

renderer

Renderer renderer

rendererTools

RendererTools rendererTools

grid

RectangularGrid grid

data

LrnFile data

bestmatches

BMFile bestmatches

heights

cern.colt.matrix.DoubleMatrix2D heights

density

cern.colt.matrix.DoubleMatrix2D density

colorStat

ColorStatistics colorStat

colorSteps

int colorSteps

Class databionics.esom.tool.legend.PictureLegend extends LegendRenderer implements Serializable

serialVersionUID: 1L

Serialized Fields

map

ColorMapping map
The Color Mapping


method

java.lang.String method

x

int x

Package databionics.esom.tool.slideshow

Class databionics.esom.tool.slideshow.PngPrefixQuestion extends javax.swing.JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

text

javax.swing.JTextField text
the text field


comboBox

javax.swing.JComboBox comboBox
the combo box


ok

javax.swing.JButton ok
the button for excepting


cancel

javax.swing.JButton cancel
the button for canceling


loader

ToolLoader loader
the global tool loader

Class databionics.esom.tool.slideshow.SlideShow extends java.awt.Frame implements Serializable

serialVersionUID: 1L

Serialized Fields

log

org.apache.log4j.Logger log

PLAY_BACK

int PLAY_BACK

PLAY_FOR

int PLAY_FOR

tool

SlideshowTool tool

imagePanel

PicPanel imagePanel

centerPanel

RenderPanel centerPanel

renderer

Renderer renderer

toolbar

javax.swing.JToolBar toolbar

south

javax.swing.JPanel south

stepForward

javax.swing.JButton stepForward

forward

javax.swing.JButton forward

stepBackward

javax.swing.JButton stepBackward

backward

javax.swing.JButton backward

stop

javax.swing.JButton stop

first

javax.swing.JButton first

sldSpeed

javax.swing.JSlider sldSpeed

pnlSpeed

javax.swing.JPanel pnlSpeed

lblSpeed

javax.swing.JLabel lblSpeed

lblSpeedSteps

javax.swing.JLabel lblSpeedSteps

exit

ExitSlideShowAction exit

method

int method

speed

int speed

thread

PlayThread thread

position

int position

stopped

boolean stopped

Class databionics.esom.tool.slideshow.SlideShowInfoTable extends AbstractToolTable implements Serializable

serialVersionUID: 1L

Class databionics.esom.tool.slideshow.SlideShowInfoTableModel extends javax.swing.table.AbstractTableModel implements Serializable

serialVersionUID: 1L

Serialized Fields

tool

AbstractTool tool

renderer

Renderer renderer

Package databionics.gui

Class databionics.gui.BaseMainFrame extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Class databionics.gui.LogPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

logger

org.apache.log4j.Logger logger
logger to add appender to


appender

org.apache.log4j.WriterAppender appender
appender to add to logger


textArea

javax.swing.JTextArea textArea
text area for messages


scrollPane

javax.swing.JScrollPane scrollPane
scrolling around messages


showProgress

boolean showProgress
flag whether to show progress bar


progressBar

javax.swing.JProgressBar progressBar
progress bar below messages


progressPattern

java.util.regex.Pattern progressPattern
regular expression for parsing progress


progressMatcher

java.util.regex.Matcher progressMatcher
regular expression matcher for parsing progress

Class databionics.gui.LogPanel.ClearAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

text

javax.swing.JTextArea text

Class databionics.gui.RunDialog extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

callback

CallBack callback
Callback for actions when job is done


tool

Tool tool
Tool to run with this dialog


job

Job job
Job created to run the tool


project

Project project
Project to update after job is done (optional)


logPanel

LogPanel logPanel
Panel to display messages in


components

java.util.Map<K,V> components
Job created to run the tool


watch

java.lang.Thread watch
Thread for the buttons


startButton

javax.swing.JButton startButton
Buttons. Needed globally to enable/disable and for event handling


stopButton

javax.swing.JButton stopButton

resetButton

javax.swing.JButton resetButton

closeButton

javax.swing.JButton closeButton

Package databionics.modules

Class databionics.modules.GreaterThanMaxException extends java.lang.Exception implements Serializable

serialVersionUID: 1L

Class databionics.modules.LessThanMinException extends java.lang.Exception implements Serializable

serialVersionUID: 1L

Class databionics.modules.Modules extends java.util.LinkedList implements Serializable

serialVersionUID: 1L


Package databionics.project

Class databionics.project.FileSlot extends java.util.LinkedList implements Serializable

serialVersionUID: 1L

Serialized Fields

type

FileType type
this slot contains filenames of this type


file

BaseFile file
the data of the first file in this slot


autoload

boolean autoload
automatically load file when name is set


max

int max
maximum size of history

Class databionics.project.Project extends java.util.ArrayList implements Serializable

serialVersionUID: 1L

Serialized Fields

name

java.lang.String name
name of the project


description

java.lang.String description
description of the project


history

java.util.List<E> history
list with finished and active jobs


changeListeners

java.util.List<E> changeListeners
List with all classes, which are informed when the files in this project have changed


clean

boolean clean
flag for a new project - to ask for a name when saving


saved

boolean saved
flag whether anything has changed since the last saving


modules

Modules modules
list of modules with tools needed for loading


Package databionics.text

Class databionics.text.StringCounter extends java.util.HashMap implements Serializable

serialVersionUID: 1L

Class databionics.text.StringList extends java.util.LinkedList implements Serializable

serialVersionUID: 1L


Package databionics.util

Class databionics.util.IntegerList extends java.util.LinkedList implements Serializable



Copyright © 2005-2006 Databionics Research Group. All Rights Reserved.