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| Packages | |
|---|---|
| databionics | Base classes for all applications handling command line parsing and configuration file loading. |
| databionics.cli | Extension of commons-cli with loading default values from config file. |
| databionics.esom | The ESOM Tools command line programs and the ESOM Analyzer. |
| databionics.esom.cooling | Provides strategies for cooling of a parameter, like the learning rate for SOM training. |
| databionics.esom.grid | ESOM grids: A grid holds the prototype vector and defines the map space topology by the function findNeighbors. |
| databionics.esom.gui | The basic GUI components of the ESOM Analyzer. |
| databionics.esom.gui.util | Some GUI components of the ESOM Analyzer. |
| databionics.esom.neighborhood | Provides neighborhood kernels for SOM training. |
| databionics.esom.renderer | Global classes for visualization. |
| databionics.esom.renderer.background | Background visualization methods that all inherit from BackgroundRenderer. |
| databionics.esom.renderer.foreground | Foreground visualization methods that all inherit from ForegroundRenderer. |
| databionics.esom.tool | |
| databionics.esom.tool.bminfo | |
| databionics.esom.tool.classmask | |
| databionics.esom.tool.component | |
| databionics.esom.tool.data | |
| databionics.esom.tool.dataclass | |
| databionics.esom.tool.info | |
| databionics.esom.tool.island | |
| databionics.esom.tool.legend | |
| databionics.esom.tool.mapview | |
| databionics.esom.tool.options | |
| databionics.esom.tool.pointinfo | |
| databionics.esom.tool.projection | |
| databionics.esom.tool.similarity | |
| databionics.esom.tool.slideshow | |
| databionics.esom.train | Implementation of training algorithms. |
| databionics.esom.train.search | |
| databionics.esom.util | Some utility classes mainly for the GUI. |
| databionics.esom.util.actions | Event handling mainly for menu of the ESOM Analyzer. |
| databionics.gui | Useful GUI classes like a panel displaying log4j messages and a dialog for running programs based on an XML description of the parameters. |
| databionics.io | Loading and saving of all file formats. |
| databionics.math | Pairwise distance calculation and Pareto Density Estimation. |
| databionics.modules | Description of program parameters loadable from XML files. |
| databionics.project | Managing a collection of file types. |
| databionics.runner | Helper class to run external tools (non-Java). |
| databionics.text | Some simple string routines including n-gram similarity. |
| databionics.util | Some utilities including searching for classes in a jar and reading an environment variable. |
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