databionics.io
Class Array3DFile

java.lang.Object
  databionics.io.BaseFile
      databionics.io.Array2DFile
          databionics.io.Array3DFile

Direct Known Subclasses:

WtsFile

public abstract class Array3DFile
extends Array2DFile

Base class for all filetypes with 3D data arrays actually stored in 3D array.

Field Summary

protected int	cols Number of columns of 3D array.
protected static org.apache.log4j.Logger	log Log4j logging.
protected int	rows Number of rows of 3D array.

Fields inherited from class databionics.io.Array2DFile

data

Fields inherited from class databionics.io.BaseFile

allowEmptyLines, comment, commentPrefix, delimiter, delimiters, file, header, headerPrefix, loc, nf

Constructor Summary

Array3DFile()
Standard constructor

Array3DFile(int rows, int cols, int dim)
Constructor with size for an empty array.

Array3DFile(java.lang.String filename)
Constructor with a filename

Method Summary

protected void	buildHeader() Generate header.
int	getColumns() Get number of columns of the pseudo 3d matrix.
int	getDimensions() Get number of dimensions of the pseudo 3d matrix.
int	getRows() Get number of rows of the pseudo 3d matrix.
protected void	init(int rows, int cols, int dim) Initialize 3D as 2D array.
protected void	parseHeader() Parse the header.

Methods inherited from class databionics.io.Array2DFile

buildLine, get, getData, getSize, init, parseLine, set, setData, setData

Methods inherited from class databionics.io.BaseFile

checkHeader, checkHeaderAgainstSize, getComment, getFile, getFilename, getHeader, getLocale, getNumberFormat, isHeader, isNaN, isNumber, load, load, parseError, save, save, setComment, setFilename, setLocale, writeStringList, writeStringList

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected static org.apache.log4j.Logger log

Log4j logging.

rows

protected int rows

Number of rows of 3D array.

cols

protected int cols

Number of columns of 3D array.

Constructor Detail

Array3DFile

public Array3DFile()

Standard constructor

Array3DFile

public Array3DFile(java.lang.String filename)

Constructor with a filename

Parameters:

filename - Name of the file

Array3DFile

public Array3DFile(int rows,
                   int cols,
                   int dim)

Constructor with size for an empty array.

Parameters:

rows - Rows of data array.

cols - Columns of data array.

dim - Dimension of data array.

Method Detail

parseHeader

protected void parseHeader()

Parse the header.

Overrides:

parseHeader in class BaseFile

init

protected void init(int rows,
                    int cols,
                    int dim)

Initialize 3D as 2D array.

Parameters:

rows - Rows of 3D data array.

cols - Columns of 3D data array.

dim - Dimension of 3D data array.

buildHeader

protected void buildHeader()

Generate header.

Overrides:

buildHeader in class Array2DFile

getDimensions

public int getDimensions()

Get number of dimensions of the pseudo 3d matrix.

getColumns

public int getColumns()

Get number of columns of the pseudo 3d matrix.

Overrides:

getColumns in class Array2DFile

getRows

public int getRows()

Get number of rows of the pseudo 3d matrix.

Overrides:

getRows in class Array2DFile