databionics.esom.tool.classmask
Class ClassmaskTool

java.lang.Object
  databionics.esom.tool.AbstractTool
      databionics.esom.tool.classmask.ClassmaskTool

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.MouseListener, java.util.EventListener

public class ClassmaskTool
extends AbstractTool
implements java.awt.event.MouseListener

Author:

Nogger, Mart, Stammi

Field Summary

protected javax.swing.JSpinner	alphaSpinner
protected boolean	autoFlood Automated floodfill or not.
protected javax.swing.JCheckBox	chkAutoFlood Chechbox for automated floodfill
protected javax.swing.JCheckBox	chkFloodFill Checkbox wether to use floodfill
protected ColorTable	colorTable
protected DataClass	currentClass
protected ClassmaskFile	data
protected boolean	floodFill Floodfill or not.
protected javax.swing.JLabel	lblTreshold Label for sldTreshold.
protected static org.apache.log4j.Logger	log
protected javax.swing.JSlider	sldTreshold This slider is used to determine the treshold for not automated floodfill
protected double	treshold The treshold for floodfill.

Fields inherited from class databionics.esom.tool.AbstractTool

application, bottomBar, bottomTab, btnClear, btnLoad, btnPaint, btnSave, clearItm, clickMode, controlButton, creatorPanel, dataTable, dataTableModel, displayPanel, dragMode, drawing, fileMenu, filename, gui, loader, loadItm, moveCallback, pnlControl, polygonMode, popMenu, removeItm, renderer, renderPanel, saveItm, toolBar, toolRenderer

Constructor Summary

ClassmaskTool(boolean gui, Application application)

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e) If the big ControlButton is pressed, select this Tool
float	getAlpha()
ColorTable	getColorTable()
DataClass	getCurrentClass()
ClassmaskFile	getData()
java.lang.String	getShortTitle()
double	getTreshold()
void	init() Initialize what needs to be Initialized.
boolean	isAutoFlood()
boolean	isFloodFill()
boolean	load(java.lang.String filename) load the neuron classification from a *.cls file
void	mouseClicked(java.awt.event.MouseEvent arg0)
void	mouseEntered(java.awt.event.MouseEvent arg0)
void	mouseExited(java.awt.event.MouseEvent arg0)
void	mousePressed(java.awt.event.MouseEvent arg0)
void	mouseReleased(java.awt.event.MouseEvent e)
void	reset() called when the actual renderer changed
void	resetGuiElements()
boolean	save(java.lang.String filename)
void	setColorTable(ColorTable colorTable)
void	setCurrentClass(DataClass currentClass)
void	setData(ClassmaskFile data)
void	setData(java.lang.Object object)
void	setDrawing(boolean drawing) set the drawing mode for this tool.
void	update() Updates all gui elements, if not null.

Methods inherited from class databionics.esom.tool.AbstractTool

callback, getApplication, getBottomTab, getCallback, getControlButton, getCreatorPanel, getDataTable, getDataTableModel, getDisplayPanel, getFileMenu, getFilename, getLoader, getMessage, getMoveCallback, getPnlControl, getPopMenu, getRenderer, getToolBar, getToolRenderer, initGui, isClickMode, isDragMode, isDrawing, isGui, isPolygonMode, moveSelection, reAreas, reColorize, reDraw, reFore, reMask, rePostFore, rePreFore, reRender, reTile, reZoom, select, setApplication, setBottomTab, setCallback, setClickMode, setControlButton, setCreatorPanel, setCtrlAccelerator, setDataTable, setDataTableModel, setDisplayPanel, setDragMode, setFilename, setLoader, setMoveCallback, setPolygonMode, setRenderer, setToolBar

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected static final org.apache.log4j.Logger log

currentClass

protected DataClass currentClass

colorTable

protected ColorTable colorTable

alphaSpinner

protected javax.swing.JSpinner alphaSpinner

data

protected ClassmaskFile data

chkFloodFill

protected javax.swing.JCheckBox chkFloodFill

Checkbox wether to use floodfill

floodFill

protected boolean floodFill

Floodfill or not.

chkAutoFlood

protected javax.swing.JCheckBox chkAutoFlood

Chechbox for automated floodfill

autoFlood

protected boolean autoFlood

Automated floodfill or not.

sldTreshold

protected javax.swing.JSlider sldTreshold

This slider is used to determine the treshold for not automated floodfill

lblTreshold

protected javax.swing.JLabel lblTreshold

Label for sldTreshold.

treshold

protected double treshold

The treshold for floodfill.

Constructor Detail

ClassmaskTool

public ClassmaskTool(boolean gui,
                     Application application)

Method Detail

init

public void init()

Description copied from class: AbstractTool

Initialize what needs to be Initialized.

Specified by:

init in class AbstractTool

update

public void update()

Description copied from class: AbstractTool

Updates all gui elements, if not null. Uses JComponent.revalidate() Better solution maybe possible.

Overrides:

update in class AbstractTool

reset

public void reset()

called when the actual renderer changed

Specified by:

reset in class AbstractTool

load

public boolean load(java.lang.String filename)

load the neuron classification from a *.cls file

Parameters:

filename -

Returns:

save

public boolean save(java.lang.String filename)

setData

public void setData(java.lang.Object object)

resetGuiElements

public void resetGuiElements()

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

If the big ControlButton is pressed, select this Tool

Specified by:

actionPerformed in interface java.awt.event.ActionListener

Overrides:

actionPerformed in class AbstractTool

Parameters:

e - an ActionEvent

getColorTable

public ColorTable getColorTable()

Returns:

Returns the colorTable.

setColorTable

public void setColorTable(ColorTable colorTable)

Parameters:

colorTable - The colorTable to set.

getAlpha

public float getAlpha()

Returns:

Returns the alphaSpinner.

getCurrentClass

public DataClass getCurrentClass()

Returns:

Returns the currentClass.

setCurrentClass

public void setCurrentClass(DataClass currentClass)

Parameters:

currentClass - The currentClass to set.

getShortTitle

public java.lang.String getShortTitle()

Specified by:

getShortTitle in class AbstractTool

setDrawing

public void setDrawing(boolean drawing)

Description copied from class: AbstractTool

set the drawing mode for this tool. if it changes, reDraw() will be called.

Overrides:

setDrawing in class AbstractTool

Parameters:

drawing - The drawing to set.

getData

public ClassmaskFile getData()

Returns:

Returns the data.

setData

public void setData(ClassmaskFile data)

Parameters:

data - The data to set.

isFloodFill

public boolean isFloodFill()

Returns:

Returns the floodFill. true if Tool is in autoclustering mode.

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent arg0)

Specified by:

mouseClicked in interface java.awt.event.MouseListener

mousePressed

public void mousePressed(java.awt.event.MouseEvent arg0)

Specified by:

mousePressed in interface java.awt.event.MouseListener

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

Specified by:

mouseReleased in interface java.awt.event.MouseListener

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent arg0)

Specified by:

mouseEntered in interface java.awt.event.MouseListener

mouseExited

public void mouseExited(java.awt.event.MouseEvent arg0)

Specified by:

mouseExited in interface java.awt.event.MouseListener

getTreshold

public double getTreshold()

Returns:

Returns the treshold.

isAutoFlood

public boolean isAutoFlood()

Returns:

Returns the autoFlood.